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2018

Sem1 links proteasome stability and specificity to multicellular development. pdf
Kolog Gulko M, Heinrich G, Gross C, Popova B, Valerius O, Neumann P, Ficner R, Braus GH.
PLoS gen., in press.

2017

Three-Dimensional Reconstruction of Nuclear Envelope Architecture Using Dual-Color Metal-Induced Energy Transfer Imaging.pdf
Chizhik AM, Ruhlandt D, Pfaff J, Karedla N, Chizhik AI, Gregor I, Kehlenbach RH, Enderlein J.
ACS Nano. 2017 Dec 26;11(12):11839-11846. doi: 10.1021/acsnano.7b04671.
Capturing the Asc1p/RACK1 microenvironment at the head region of the 40S ribosome with quantitative BioID.pdf
Opitz N, Schmitt K, Hofer-Pretz V, Neumann B, Krebber H, Braus GH, Valerius O.
Mol Cell Proteomics. 2017 Dec;16(12):2199-2218. doi: 10.1074/mcp.M116.066654.
Slam protein dictates subcellular localization and translation of its own mRNA.pdf
Yan S, Acharya S, Gröning S, Großhans J.
PLoS Biol. 2017 Dec 4;15(12):e2003315. doi: 10.1371/journal.pbio.2003315.
Mechanism of Transcription Anti-termination in Human Mitochondria.pdf
Hillen HS, Parshin AV, Agaronyan K, Morozov YI, Graber JJ, Chernev A, Schwinghammer K, Urlaub H, Anikin M, Cramer P, Temiakov D.
Cell. 2017 Nov 16;171(5):1082-1093.e13. doi: 10.1016/j.cell.2017.09.035.
Structural Basis of Mitochondrial Transcription Initiation.pdf
Hillen HS, Morozov YI, Sarfallah A, Temiakov D, Cramer P.
Cell. 2017 Nov 16;171(5):1072-1081.e10. doi: 10.1016/j.cell.2017.10.036.
Structures of transcription pre-initiation complex with TFIIH and Mediator.pdf
Schilbach S, Hantsche M, Tegunov D, Dienemann C, Wigge C, Urlaub H, Cramer P.
Nature. 2017 Nov 9;551(7679):204-209. doi: 10.1038/nature24282.
INA complex liaises the F1Fo-ATP synthase membrane motor modules.pdf
Naumenko N, Morgenstern M, Rucktäschel R, Warscheid B, Rehling P.
Nat Commun. 2017 Nov 1;8(1):1237. doi: 10.1038/s41467-017-01437-z.
Tuning the ribosome: the influence of rRNA modification on eukaryotic ribosome biogenesis and function.pdf
Sloan KE, Warda AS, Sharma S, Entian KD, Lafontaine DL, Bohnsack MT.
RNA Biol. 2017 Sep 2;14(9):1138-1152. doi: 10.1080/15476286.2016.1259781.
Cation selectivity of the presequence translocase channel Tim23 is crucial for efficient protein import.pdf
Denkert N, Schendzielorz AB, Barbot M, Versemann L, Richter F, Rehling P, Meinecke M.
Elife. 2017 Aug 31;6. pii: e28324. doi: 10.7554/eLife.28324.
Data-driven coarse graining of large biomolecular structures.pdf
Chen YL, Habeck M.
PLoS One. 2017 Aug 17;12(8):e0183057. doi: 10.1371/journal.pone.0183057.
Liquid-liquid phase separation of the microtubule-binding repeats of the Alzheimer-related protein Tau.pdf
Ambadipudi S, Biernat J, Riedel D, Mandelkow E, Zweckstetter M.
Nat Commun. 2017 Aug 17;8(1):275. doi: 10.1038/s41467-017-00480-0.
Cryo-EM structure of a pre-catalytic human spliceosome primed for activation.pdf
Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, Lührmann R, Stark H.
Cell. 2017 Aug 10;170(4):701-713.e11. doi: 10.1016/j.cell.2017.07.011.
Studying structure and function of spliceosomal helicases.pdf
Ficner R, Dickmanns A, Neumann P.
Methods. 2017 Aug 1;125:63-69. doi: 10.1016/j.ymeth.2017.06.028.
Quick or Quality? How mRNA escapes nuclear quality control during stress.pdf
Zander G, Krebber H.
RNA Biol. 2017 Jul 14:1-7. doi: 10.1080/15476286.2017.1345835.
Ribosome rearrangements at the onset of translational bypassing.pdf
Agirrezabala X, Samatova E, Klimova M, Zamora M, Gil-Carton G, Rodnina MV, Valle M.
Sci Adv. 2017 Jun 7;3(6):e1700147. doi: 10.1126/sciadv.1700147.
Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex.pdf
Xu Y, Bernecky C, Lee CT, Maier KC, Schwalb B, Tegunov D, Plitzko JM, Urlaub H, Cramer P.
Nat Commun. 2017 Jun 6;8:15741. doi: 10.1038/ncomms15741.
Long-range allosteric regulation of the human 26S proteasome by 20S proteasome-targeting cancer drugs.pdf
Haselbach D, Schrader J, Lambrecht F, Henneberg F, Chari A, Stark H.
Nat Commun. 2017 May 25;8:15578. doi: 10.1038/ncomms15578.
The highly conserved Asp23 family protein YqhY plays a role in lipid biosynthesis in Bacillus subtilis.pdf
Tödter D, Gunka K, Stülke J.
Front Microbiol. 2017 May 19;8:883. doi: 10.3389/fmicb.2017.00883.
Conditional switch between frameshifting regimes upon translation of dnaX mRNA.pdf
Caliskan N, Wohlgemuth I, Korniy N, Pearson M, Peske F, Rodnina MV.
Mol Cell. 2017 May 18;66(4):558-567.e4. doi: 10.1016/j.molcel.2017.04.023.
Core Mediator structure at 3.4 Å extends model of transcription initiation complex.pdf
Nozawa K, Schneider TR, Cramer P.
Nature. 2017 May 11;545(7653):248-251. doi: 10.1038/nature22328.
The target of the DEAH-box NTP triphosphatase Prp43 in Saccharomyces cerevisiae spliceosomes is the U2 snRNP-intron interaction.pdf
Fourmann JB, Dybkov O, Agafonov DE, Tauchert MJ, Urlaub H, Ficner R, Fabrizio P, Lührmann R.
Elife. 2016 Apr 26;5. pii: e15564. doi: 10.7554/eLife.15564.
Modeling of Biomolecular Assemblies with Cryo-EM Maps.pdf
Habeck M.
Front Mol Biosci. 2017 Mar 22;4:15. doi: 10.3389/fmolb.2017.00015.
Cryo-EM structure of a human spliceosome activated for step 2 of splicing.pdf
Bertram K, Agafonov DE, Liu WT, Dybkov O, Will CL, Hartmuth K, Urlaub H, Kastner B, Stark H, Lührmann R.
Nature. 2017 Feb 16;542(7641):318-323. doi: 10.1038/nature21079.
A novel translational control mechanism involving RNA structures within coding sequences.pdf
Jungfleisch J, Nedialkova D, Dotu I, Sloan KE, Martinez-Bosch N, Brüning L, Raineri E, Navarro P, Bohnsack MT, Leidel SA, Diez J.
Genome Res. 2017 Jan;27(1):95-106. doi: 10.1101/gr.209015.116.
Structural insights into the mechanism of the DEAH-box RNA helicase Prp43.pdf
Tauchert MJ, Fourmann JB, Lührmann R, Ficner R.
Elife. 2017 Jan 16;6. pii: e21510. doi: 10.7554/eLife.21510.
Two distinct membrane potential-dependent steps drive mitochondrial matrix protein translocation.pdf
Schendzielorz AB, Schulz C, Lytovchenko O, Clancy A, Guiard B, Ieva R, van der Laan M, Rehling P.
J Cell Biol. 2017 Jan 2;216(1):83-92. doi: 10.1083/jcb.201607066.

2016

mRNA quality control is bypassed for an immediate export of stress responsive transcripts.pdf
Zander G, Hackmann A, Bender L, Becker D, Lingner T, Salinas G, Krebber H.
Nature. 2016 Dec 12. doi: 10.1038/nature20572.
Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data.pdf
Carstens S, Nilges M, Habeck M.
PLoS Comput Biol. 2016 Dec 27;12(12):e1005292. doi: 10.1371/journal.pcbi.1005292.
Atg8 lipidation is coordinated in a PtdIns3P-dependent manner by the PROPPIN Atg21.pdf
Krick R, Thumm M
Autophagy. 2016 Nov;12(11):2260-2261.
The oncogenic fusion proteins SET-Nup214 and sequestosome-1 (SQSTM1)-Nup214 form dynamic nuclear bodies and differentially affect nuclear protein- and poly(A)+ RNA export.pdf
Port SA, Mendes A, Valkova C, Spillner C, Fahrenkrog B, Kaether C, Kehlenbach RH.
J Biol Chem. 2016 Oct 28;291(44):23068-23083. Epub 2016 Sep 9.
Mitochondrial Protein Synthesis Adapts to Influx of Nuclear-Encoded Protein. pdf
Richter-Dennerlein R, Oeljeklaus S, Lorenzi I, Ronsör C, Bareth B, Schendzielorz AB, Wang C, Warscheid B, Rehling P, Dennerlein S.
Cell. 2016 Oct 6;167(2):471-483.e10. doi: 10.1016/j.cell.2016.09.003.
Molecular architecture of the Saccharomyces cerevisiae activated spliceosome.pdf
Rauhut R, Fabrizio P, Dybkov O, Hartmuth K, Pena V, Chari A, Kumar V, Lee CT, Urlaub H, Kastner B, Stark H, Lührmann R.
Science. 2016 Sep 23;353(6306):1399-1405. Epub 2016 Aug 25.
Localization of components of the RNA-degrading machine in Bacillus subtilis.pdf
Cascante-Estepa N, Gunka K, Stülke J.
Front Microbiol. 2016 Sep 21;7:1492. eCollection 2016.
SCF ubiquitin ligase F-box protein Fbx15 controls nuclear co-repressor localization, stress response and virulence of the human pathogen Aspergillus fumigatus.pdf
Jöhnk B, Bayram Ö, Abelmann A, Heinekamp T, Mattern D, Brakhage AA, Jacobsen ID, Valerius O, Braus GH.
PLoS Pathog. 2016 Sep 20;12(9):e1005899. doi: 10.1371/journal.ppat.1005899.
FQProfiler and RNP(xl): Open-Source Tools for Label-Free Quantification and Protein-RNA Cross-Linking Integrated into Proteome Discoverer.pdf
Veit J, Sachsenberg T, Chernev A, Aicheler F, Urlaub H, Kohlbacher O.
J Proteome Res. 2016 Sep 2;15(9):3441-8. doi: 10.1021/acs.jproteome.6b00407.
A probabilistic model for detecting rigid domains in protein structures.pdf
Nguyen T, Habeck M.
Bioinformatics. 2016 Sep 1;32(17):i710-i717. doi: 10.1093/bioinformatics/btw442.
Analysis of CRM1-dependent nuclear export in permeabilized cells.pdf
Kehlenbach RH, Port SA.
Methods Mol Biol. 2016;1411:489-501. doi: 10.1007/978-1-4939-3530-7_30.
Analyzing Protein- Phosphoinositide Interactions with Liposome Flotation Assays.pdf
Busse RA, Scacioc A, Schalk AM, Krick R, Thumm M, Kühnel K.
Methods Mol Biol. 2016;1376:155-62. doi: 10.1007/978-1-4939-3170-5_13.
Kinetics of spontaneous and EF-G-accelerated rotation of ribosomal subunits.pdf
Sharma H, Adio S, Senyushkina T, Belardinelli R, Peske F, Rodnina MV.
Cell Rep. 2016 Aug 23;16(8):2187-2196. doi: 10.1016/j.celrep.2016.07.051.
The inhibition mechanism of human 20S proteasomes enables next-generation inhibitor design.pdf
Schrader J, Henneberg F, Mata RA, Tittmann K, Schneider TR, Stark H, Bourenkov G, Chari A.
Science. 2016 Aug 5;353(6299):594-8. doi: 10.1126/science.aaf8993.
A spliceosome intermediate with loosely associated tri-snRNP accumulates in the absence of Prp28 ATPase activity.pdf
Boesler C, Rigo N, Anokhina MM, Tauchert MJ, Agafonov DE, Kastner B, Urlaub H, Ficner R, Will CL, Lührmann R.
Nat Commun. 2016 Jul 5;7:11997. doi: 10.1038/ncomms11997.
Impact of the crystallization condition on Importin-beta conformation.pdf
Tauchert M, Hemonnot C, Neumann P, Köster S, Ficner R, Dickmanns A.
Acta Crystallogr D Struct Biol. 2016 Jun;72(Pt 6):705-17. doi: 10.1107/S2059798316004940.
The adaptor protein CIN85 assembles intracellular signaling clusters for B cell activation.pdf
Kühn J, Wong LE, Pirkuliyeva S, Schulz K, Schwiegk C, Fünfgeld KG, Keppler S, Batista FD, Urlaub H, Habeck M, Becker S, Griesinger C, Wienands J
Sci Signal. 2016 Jun 28;9(434):ra66. doi: 10.1126/scisignal.aad6275.
Structure of the exportin Xpo4 in complex with RanGTP and the hypusine-containing translation factor eIF5A.pdf
Aksu M, Trakhanov S, Görlich D.
Nat Commun. 2016 Jun 16;7:11952. doi: 10.1038/ncomms11952.
Dual RING E3 Architectures Regulate Multiubiquitination and Ubiquitin Chain Elongation by APC/C.pdf
Brown NG, VanderLinden R, Watson ER, Weissmann F, Ordureau A, Wu KP, Zhang W, Yu S, Mercredi PY, Harrison JS, Davidson IF, Qiao R, Lu Y, Dube P, Brunner MR, Grace CR, Miller DJ, Haselbach D*, Jarvis MA, Yamaguchi M, Yanishevski D, Petzold G, Sidhu SS, Kuhlman B, Kirschner MW, Harper JW, Peters JM, Stark H, Schulman BA.
Cell. 2016 Jun 2;165(6):1440-1453. doi: 10.1016/j.cell.2016.05.037.
Structural analysis of the spliceosomal RNA helicase Prp28 from the thermophilic eukaryote Chaetomium thermophilum.pdf
Tauchert MJ, Ficner R.
Acta Crystallogr F Struct Biol Commun. 2016 May;72(Pt 5):409-16. doi: 10.1107/S2053230X16006038.
The target of the DEAH-box NTP triphosphatase Prp43 in Saccharomyces cerevisiae spliceosomes is the U2 snRNP-intron interaction.pdf
Fourmann JB, Dybkov O, Agafonov DE, Tauchert MJ, Urlaub H, Ficner R, Fabrizio P, Lührmann R.
Elife. 2016 Apr 26;5. pii: e15564. doi: 10.7554/eLife.15564.
Choreography of molecular movements during ribosome progression along mRNA.pdf
Belardinelli R, Sharma H, Caliskan N, da Cunha CEL, Peske F, Wintermeyer W, Rodnina MV.
Nat Struct Mol Biol. 2016 Apr;23(4):342-8. doi: 10.1038/nsmb.3193.
The DenA/ DEN1 interacting phosphatase DipA controls septa positioning and phosphorylation- dependent stability of cytoplasmatic DenA/DEN1 during fungal development.pdf
Schinke J, Kolog Gulko M, Christmann M, Valerius O, Stumpf SK, Stirz M, Braus GH.
PLoS Genet. 2016 Mar 24;12(3):e1005949. doi: 10.1371/journal.pgen.1005949.
Molecular architecture of the human U4/U6.U5 tri-snRNP.pdf
Heininger AU, Hackert P, Andreou AZ, Boon KL, Memet I, Prior M, Clancy A, Schmidt B, Urlaub H, Schleiff E, Sloan KE, Deckers M, Lührmann R, Enderlein J, Klostermeier D, Rehling P, Bohnsack MT.
Science. 2016 Mar 25;351(6280):1416-20. doi: 10.1126/science.aad2085.
Correction: Nanobodies: site-specific labeling for super-resolution imaging, rapid epitope-mapping and native protein complex isolation.pdf
Pleiner T, Bates M, Trakhanov S, Lee CT, Schliep JE, Chug H, Böhning M, Stark H, Urlaub H, Görlich D.
Elife. 2016 Mar 16;5. pii: e15597. doi: 10.7554/eLife.15597.
Protein cofactor competition regulates the action of a multifunctional RNA helicase in different pathways.pdf
Agafonov D, Kastner B, Dybkov O, Hofele RV, Liu W, Urlaub H, Lührmann R, Stark H.
RNA Biol. 2016 Mar 3;13(3):320-30. doi: 10.1080/15476286.2016.1142038.
Changes of global expression and secondary metabolite accumulation during light-dependent Aspergillus nidulans development.pdf
Bayram Ö, Feussner K, Dumkow M, Herrfurth C, Feussner I, Braus GH.
Fungal Genet Biol. 2016 Feb;87:30-53. doi: 10.1016/j.fgb.2016.01.004.
The devil is in the details – Comparison between COP9 signalosome (CSN) and the LID of the 26S proteasome.pdf
Meister C, Kolog Gulko M, Köhler AM, Braus GH.
Curr Genet. 2016 Feb;62(1):129-36.
Retention and splicing complex (RES) - the importance of cooperativity.pdf
Wysoczanski P, Zweckstetter M.
RNA Biol. 2016 Feb;13(2):128-33. doi: 10.1080/15476286.2015.1096484.
Nuclear Export of Pre-Ribosomal Subunits Requires Dbp5, but Not as an RNA-Helicase as for mRNA Export.pdf
Neumann B, Wu H, Hackmann A, Krebber H.
PLoS One. 2016 Feb 12;11(2):e0149571. doi: 10.1371/journal.pone.0149571.
Structural and functional analysis of the RNA helicase Prp43 from the thermophilic eukaryote Chaetomium thermophilum.pdf
Tauchert MJ, Fourmann JB, Christian H, Lührmann R, Ficner R.
Acta Crystallogr F Struct Biol Commun. 2016 Feb 1;72(Pt 2):112-20. doi: 10.1107/S2053230X15024498.
Emery-Dreifuss muscular dystrophy mutations impair TRC40-mediated targeting of emerin to the inner nuclear membrane.pdf
Pfaff J, Rivera Monroy, J, Jamieson, C, Rajanala, K, Vilardi, F, Schwappach B, Kehlenbach RH.
J Cell Sci. 2016 Feb 1;129(3):502-16. doi: 10.1242/jcs.179333.
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2015

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning.pdf
Kirli K, Karaca S, Dehne HJ, Samwer M, Pan KT, Lenz C, Urlaub H, Görlich D.
Elife. 2015 Dec 17;4. pii: e11466. doi: 10.7554/eLife.11466.
Tuning and switching enantioselectivity of asymmetric carboligation in an enzyme through mutational analysis of a single hot spot.pdf
Wechsler C, Meyer D, Loschonsky S, Funk LM, Neumann P, Ficner R, Brodhun F, Müller M, Tittmann K.
Chembiochem. 2015 Dec;16(18):2580-4. doi: 10.1002/cbic.201500529.
Directional transition from initiation to elongation in bacterial translation.pdf
Goyal A, Belardinelli R, Maracci C, Milón P, Rodnina MV.
Nucleic Acids Res. 2015 Dec 15;43(22):10700-12. doi: 10.1093/nar/gkv869.
Dithiothreitol (DTT) Acts as a Specific, UV-inducible Cross-linker in Elucidation of Protein- RNA Interactions.pdf
Zaman U, Richter FM, Hofele R, Kramer K, Sachsenberg T, Kohlbacher O, Lenz C, Urlaub H.
Mol Cell Proteomics. 2015 Dec;14(12):3196-210. doi: 10.1074/mcp.M115.052795.
Combining dehydration, construct optimization and improved data collection to solve the crystal structure of a CRM1-RanGTP-SPN1-Nup214 quaternary nuclear export complex.pdf
Monecke T, Dickmanns A, Weiss MS, Port SA, Kehlenbach RH, Ficner R.
Acta Crystallogr F Struct Biol Commun. 2015 Dec 1;71(Pt 12):1481-7. doi: 10.1107/S2053230X15021524.
Structural Ensembles of Intrinsically Disordered Proteins Depend Strongly on Force Field: A Comparison to Experiment.pdf
Rauscher S, Gapsys V, Gajda MJ, Zweckstetter M, de Groot BL, Grubmuller H.
J Chem Theory Comput. 2015 Nov 10;11(11):5513-24. doi: 10.1021/acs.jctc.5b00736.
Structural and Functional Characterization of CRM1-Nup214 Interactions Reveals Multiple FG-Binding Sites Involved in Nuclear Export.pdf
Port SA, Monecke T, Dickmanns A, Spillner C, Hofele R, Urlaub H, Ficner R, Kehlenbach RH.
Cell Rep. 2015 Oct 27;13(4):690-702. doi: 10.1016/j.celrep.2015.09.042.
Simultaneous Measurement of the Three-Dimensional Orientation of Excitation and Emission Dipoles.pdf
Karedla N, Stein SC, Hähnel D, Gregor I, Chizhik A, Enderlein J.
Phys Rev Lett. 2015 Oct 23;115(17):173002. doi: 10.1103/PhysRevLett.115.173002.
Crystal structure of the metazoan Nup62•Nup58•Nup54 nucleoporin complex.pdf
Chug H, Trakhanov S, Hülsmann BB, Pleiner T, Görlich D.
Science. 2015 Oct 2;350(6256):106-10. doi: 10.1126/science.aac7420.
Hybrid structure of the type 1 pilus of uropathogenic Escherichia Coli.pdf
Habenstein B, Loquet A, Hwang S, Giller K, Vasa SK, Becker S, Habeck M, Lange A.
Angew Chem Int Ed Engl. 2015 Sep 28;54(40):11691-5. doi: 10.1002/anie.201505065.
Structural Basis of Targeting the Exportin CRM1 in Cancer.pdf
Dickmanns A, Monecke T, Ficner R.
Cells. 2015 Sep 21;4(3):538-68. doi: 10.3390/cells4030538. Review.
ProteoPlex: stability optimization of macromolecular complexes by sparse-matrix screening of chemical space.pdf
Chari A, Haselbach D*, Kirves JM, Ohmer J, Paknia E, Fischer N, Ganichkin O, Moller V, Frye JJ, Petzold G, Jarvis M, Tietzel M, Grimm C, Peters JM, Schulman BA, Tittmann K, Markl J, Fischer U, Stark H.
Nat Methods. 2015 Sep;12(9):859-65. doi: 10.1038/nmeth.3493.
GraDeR: Membrane Protein Complex Preparation for Single-Particle Cryo-EM.pdf
Hauer F, Gerle C, Fischer N, Oshima A, Shinzawa-Itoh K, Shimada S, Yokoyama K, Fujiyoshi Y, Stark H.
Structure. 2015 Sep 1;23(9):1769-75. doi: 10.1016/j.str.2015.06.029.
A presequence-binding groove in Tom70 supports import of Mdl1 into mitochondria.pdf
Melin J, Kilisch M, Neumann P, Lytovchenko O, Gomkale R, Schendzielorz A, Schmidt B, Liepold T, Ficner R, Jahn O, Rehling P, Schulz C.
Biochim Biophys Acta. 2015 Aug;1853(8):1850-9. doi: 10.1016/j.bbamcr.2015.04.021.
Structures of intermediates during RES complex assembly.pdf
Wysoczanski P, Becker S, Zweckstetter M.
Sci Rep. 2015 Jul 27;5:12545. doi: 10.1038/srep12545.
MD simulations and FRET reveal an environment-sensitive conformational plasticity of importin-β.pdf
Halder K, Dölker N, Van Q, Gregor I, Dickmanns A, Baade I, Kehlenbach RH, Ficner R, Enderlein J, Grubmüller H, Neumann H.
Biophys J. 2015 Jul 21;109(2):277-86. doi: 10.1016/j.bpj.2015.06.014.
Integration of the catalytic subunit activates deneddylase activity in vivo as final step in fungal COP9 signalosome assembly.pdf
Beckmann EA, Köhler AM, Meister C, Christmann M, Draht O, Rakebrandt N, Valerius O, Braus GH.
Mol Microbiol. 2015 Jul;97(1):110-24. doi: 10.1111/mmi.13017.
Fluctuations between multiple EF-G-induced chimeric tRNA states during translocation on the ribosome.pdf
Adio S, Senyushkina T, Peske F, Fischer N, Wintermeyer W, Rodnina MV.
Nat Commun. 2015 Jun 15;6:7442. doi: 10.1038/ncomms8442.
Characterization of PROPPIN-Phosphoinositide Binding and Role of Loop 6CD in PROPPIN-Membrane Binding.pdf
Busse RA, Scacioc A, Krick R, Pérez-Lara Á, Thumm M, Kühnel K.
Biophys J. 2015 May 5;108(9):2223-34. doi: 10.1016/j.bpj.2015.03.045.
Structure of the E. coli ribosome-EF-Tu complex at <3 Å resolution by Cs-corrected cryo-EM.pdf
Fischer N, Neumann P, Konevega AL, Bock LV, Ficner R, Rodnina MV, Stark H.
Nature. 2015 Apr 23;520(7548):567-70. doi: 10.1038/nature14275.
HYCUD: a computational tool for prediction of effective rotational correlation time in flexible proteins.pdf
Rezaei-Ghaleh N, Klama F, Munari F, Zweckstetter M.
Bioinformatics. 2015 Apr 15;31(8):1319-21. doi: 10.1093/bioinformatics/btu824.
PI3P binding by Atg21 organises Atg8 lipidation.pdf
Juris L, Montino M, Rube P, Schlotterhose P, Thumm M, Krick R.
EMBO J. 2015 Apr 1;34(7):955-73. doi: 10.15252/embj.201488957.
Bayesian inference of initial models in cryo-electron microscopy using pseudo-atoms.pdf
Joubert P, Habeck M.
Biophys J. 2015 Mar 10;108(5):1165-75. doi: 10.1016/j.bpj.2014.12.054.
Structural and biochemical analysis of the essential diadenylate cyclase CdaA from Listeria monocytogenes.pdf
Rosenberg J, Dickmanns A, Neumann P, Gunka K, Arens J, Kaever V, Stülke J, Ficner R, Commichau FM.
J Biol Chem. 2015 Mar 6;290(10):6596-606. doi: 10.1074/jbc.M114.630418.
Ultra-stable and versatile widefield cryo-fluorescence microscope for single-molecule localization with sub-nanometer accuracy.pdf
Li W, Stein SC, Gregor I, Enderlein J.
Opt Express. 2015 Feb 9;23(3):3770-83. doi: 10.1364/OE.23.003770.
Identification, characterization, and structure analysis of the cyclic di-AMP-binding PII-like signal transduction protein DarA.pdf
Gundlach J, Dickmanns A, Schröder-Tittmann K, Neumann P, Kaesler J, Kampf J, Herzberg C, Hammer E, Schwede F, Kaever V, Tittmann K, Stülke J, Ficner R.
J Biol Chem. 2015 Jan 30;290(5):3069-80. doi: 10.1074/jbc.M114.619619.
The G-patch protein Spp2 couples the spliceosome-stimulated ATPase activity of the DEAH-box protein Prp2 to catalytic activation of the spliceosome.pdf
Warkocki Z, Schneider C, Mozaffari-Jovin S, Schmitzová J, Höbartner C, Fabrizio P, Lührmann R.
Genes Dev. 2015 Jan 1;29(1):94-107. doi: 10.1101/gad.253070.114.
One Juliet and four Romeos: VeA and its methyltransferases.pdf
82. Sarikaya-Bayram Ö, Palmer JM, Keller N, Braus GH, Bayram Ö.
Front Microbiol. 2015 Jan 20;6:1. doi: 10.3389/fmicb.2015.00001.
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2014

Interaction of the intermembrane space domain of Tim23 protein with mitochondrial membranes.pdf
Bajaj R, Munari F, Becker S, Zweckstetter M.
J Biol Chem. 2014 Dec 12;289(50):34620-6. doi: 10.1074/jbc.M114.595702.
Caught in the act: RNA-seq provides novel insights into mRNA degradation.pdf
Gerwig J, Stülke J.
Mol Microbiol. 2014 Oct;94(1):5-8. doi: 10.1111/mmi.12769.
Cooperative structure of the heterotrimeric pre-mRNA retention and splicing complex.pdf
Wysoczański P, Schneider C, Xiang S, Munari F, Trowitzsch S, Wahl MC, Lührmann R, Becker S, Zweckstetter M.
Nat Struct Mol Biol. 2014 Oct;21(10):911-8. doi: 10.1038/nsmb.2889.
Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins.pdf
Kramer K, Sachsenberg T, Beckmann BM, Qamar S, Boon KL, Hentze MW, Kohlbacher O, Urlaub H.
Nat Methods. 2014 Oct;11(10):1064-70. doi: 10.1038/nmeth.3092.
Manipulation of fungal development as source of novel secondary metabolites for biotechnology. pdf
Gerke J, Braus GH.
Appl Microbiol Biotechnol. 2014 Oct;98(20):8443-55. doi: 10.1007/s00253-014-5997-8.
Molecular basis of the dynamic structure of the TIM23 complex in the mitochondrial intermembrane space. pdf
Bajaj R, Jaremko Ł, Jaremko M, Becker S, Zweckstetter M.
Structure. 2014 Oct 7;22(10):1501-11. doi: 10.1016/j.str.2014.07.015.
Telomerase RNA TLC1 shuttling to the cytoplasm requires mRNA export factors and is important for telomere maintenance. pdf
Wu H, Becker D, Krebber H.
Cell Rep. 2014 Sep 25;8(6):1630-8. doi: 10.1016/j.celrep.2014.08.021.
Macromolecular assembly of the adaptor SLP-65 at intracellular vesicles in resting B cells. pdf
Engelke M, Pirkuliyeva S, Kühn J, Wong L, Boyken J, Herrmann N, Becker S, Griesinger C, Wienands J.
Sci Signal. 2014 Aug 19;7(339):ra79. doi: 10.1126/scitranslmed.2005104.
The INA complex facilitates assembly of the peripheral stalk of the mitochondrial F1Fo-ATP synthase. pdf
Lytovchenko O, Naumenko N, Oeljeklaus S, Schmidt B, von der Malsburg K, Deckers M, Warscheid B, van der Laan M, Rehling P.
EMBO J. 2014 Aug 1;33(15):1624-38. doi: 10.15252/embj.201488076.
A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase. pdf
Martin R, Hackert P, Ruprecht M, Simm S, Brüning L, Mirus O, Sloan KE, Kudla G, Schleiff E, Bohnsack MT
RNA. 2014 Aug;20(8):1173-82. doi: 10.1261/rna.044669.114.
Presequence recognition by the Tom40 channel contributes to precursor translocation into the mitochondrial matrix. pdf
Melin J, Schulz C, Wrobel L, Bernhard O, Chacinska A, Jahn O, Schmidt B, Rehling P.
Mol Cell Biol. 2014 Sep 15;34(18):3473-85. doi: 10.1128/MCB.00433-14.
Control of the Diadenylate Cyclase CdaS in Bacillus subtilis: An Autoinhibitory Domain Limits c-di-AMP Production. pdf
Mehne FM, Schroder-Tittmann K, Eijlander RT, Herzberg C, Hewitt L, Kaever V, Lewis RJ, Kuipers OP, Tittmann K, Stulke J.
J Biol Chem. 2014 Jul 25;289(30):21098-107. doi: 10.1074/jbc.M114.562066.
High-efficiency translational bypassing of non-coding nucleotides specified by mRNA structure and nascent peptide.pdf
Samatova E, Konevega AL, Wills NM, Atkins JF, Rodnina MV.
Nat Commun. 2014 Jul 21;5:4459. doi: 10.1038/ncomms5459.
Remodelling of the active presequence translocase drives motor- dependent mitochondrial protein translocation.pdf
Schulz C, Rehling P.
Nat Commun. 2014 Jul 10;5:4349. doi: 10.1038/ncomms5349.
Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28. pdf
Möhlmann S, Mathew R, Neumann P, Schmitt A, Lührmann R, Ficner R.
Acta Crystallogr D Biol Crystallogr. 2014 Jun;70(Pt 6):1622-30. doi: 10.1107/S1399004714006439.
Programmed –1-frameshifting by kinetic partitioning during impeded translocation.pdf
Caliskan N, Katunin VI, Belardinelli R, Peske F, Rodnina MV.
Cell. 2014 Jun 19;157(7):1619-31. doi: 10.1016/j.cell.2014.04.041.
Membrane-Bound Methyltransferase Complex VapA-VipC-VapB Guides Epigenetic Control of Fungal Development. pdf
Sarikaya-Bayram O, Bayram O, Feussner K, Kim JH, Kim HS, Kaever A, Feussner I, Chae KS, Han DM, Han KH, Braus GH.
Dev Cell. 2014 May 27;29(4):406-20. doi: 10.1016/j.devcel.2014.03.020.
Allosteric control of the exportin CRM1 unraveled by crystal structure analysis. pdf
Monecke T, Dickmanns A, Ficner R.
FEBS J. 2014 May 14. doi: 10.1111/febs.12842.
Quality control of spliced mRNAs requires the shuttling SR proteins Gbp2 and Hrb1.pdf
Hackmann A, Wu H, Schneider UM, Meyer K, Jung K, Krebber H.
Nat Commun. 2014;5:3123. doi: 10.1038/ncomms4123.
GTP hydrolysis by EF-G synchronizes tRNA translocation on small and large ribosomal subunits.pdf
Holtkamp W, Cunha C, Peske F, Konevega AL, Wintermeyer W, Rodnina MV.
EMBO J. 2014 May 2;33(9):1073-85. doi: 10.1002/embj.201387465.
Purification of protein complexes of defined subunit stoichiometry using a set of orthogonal, tag-cleaving proteases. pdf
Frey S, Görlich D.
J Chromatogr A. 2014 Apr 11;1337:106-15. doi: 10.1016/j.chroma.2014.02.030.
A new set of highly efficient, tag-cleaving proteases for purifying recombinant proteins. pdf
Frey S, Görlich D.
J Chromatogr A. 2014 Apr 11;1337:95-105. doi: 10.1016/j.chroma.2014.02.029.
Single-Molecule Metal Induced Energy Transfer (smMIET): Resolving nanometer distances at single molecule level.pdf
Karedla N, Chizhik AI, Gregor I, Enderlein J.
Chemphyschem. 2014 Mar 17;15(4):705-11. doi: 10.1002/cphc.201300760.
Function and dynamics of slam in furrow formation in early Drosophila embryo.pdf
Acharya S, Laupsien P, Wenzl C, Yan S, Großhans J.
Dev Biol. 2014 Feb 15;386(2):371-84. doi: 10.1016/j.ydbio.2013.12.022.
The YmdB phosphodiesterase is a global regulator of late adaptive responses in Bacillus subtilis. pdf
Diethmaier C, Newman JA, Kovács AT, Kaever V, Herzberg C, Rodrigues C, Boonstra M, Kuipers OP, Lewis RJ, Stülke J.
J Bacteriol. 2014 Jan;196(2):265-75. doi: 10.1128/JB.00826-13.
SubtiWiki – a database for the model organism Bacillus subtilis that links pathway, interaction and expression information.pdf
Michna RH, Commichau FM, Tödter D, Zschiedrich CP, Stülke J.
Nucleic Acids Res. 2014 Jan;42(Database issue):D692-8. doi: 10.1093/nar/gkt1002.
Insights into the activation of the helicase Prp43 by biochemical studies and structural mass spectrometry. pdf
Christian H, Hofele RV, Urlaub H, Ficner R.
Nucleic Acids Res. 2014 Jan 1;42(2):1162-79. doi: 10.1093/nar/gkt985.

2013

The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κB.  pdf
Ahmed, Y.L., Gerke, J., Park, H.-S., Bayram, Ö., Neumann, P., Min Ni, M., Dickmanns, A., Kim, S.C. , Yu, J.-H., Braus, G.H. and Ficner, R. .
PLoS Biol. 2013 Dec;11(12):e1001750. doi: 10.1371/journal.pbio.1001750.
Structural basis for cooperativity of CRM1 export complex formation. pdf
Monecke T, Haselbach D, Voß B, Russek A, Neumann P, Thomson E, Hurt E, Zachariae U, Stark H, Grubmüller H, Dickmanns A, Ficner R.
Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):960-5. doi: 10.1073/pnas.1215214110.
Propranolol Restricts the Mobility of Single EGF-Receptors on the Cell Surface before Their Internalization. pdf
Carolina Otero, Max Linke, Paula Sanchez, Alfonso González, Iwan A. T. Schaap
PLoS One. 2013 Dec 9;8(12):e83086. doi: 10.1371/journal.pone.0083086.
Cutting Edge: Feed-Forward Activation of Phospholipase Cγ2 via C2 Domain-Mediated Binding to SLP65. pdf
Engelke M, Oellerich T, Dittmann K, Hsiao HH, Urlaub H, Serve H, Griesinger C, Wienands J.
J Immunol. 2013 Dec 1;191(11):5354-8. doi: 10.4049/jimmunol.1301326.
Monosome Formation during Translation Initiation Requires the Serine/Arginine-Rich Protein Npl3. pdf
Baierlein C, Hackmann A, Gross T, Henker L, Hinz F, Krebber H.
Mol Cell Biol. 2013 Dec;33(24):4811-23. doi: 10.1128/MCB.00873-13.
A high-speed vertical optical trap for the mechanical testing of living cells at piconewton forces. pdf
Bodensiek K, Li W, Sánchez P, Nawaz S, Schaap IA.
Rev Sci Instrum. 2013 Nov;84(11):113707. doi: 10.1063/1.4832036.
Energy barriers and driving forces in tRNA translocation through the ribosome. pdf
Bock LV, Blau C, Schröder GF, Davydov II, Fischer N, Stark H, Rodnina MV, Vaiana AC, Grubmüller H.
Nat Struct Mol Biol. 2013 Nov 3. doi: 10.1038/nsmb.2690.
Phosphorylation Drives a Dynamic Switch in Serine/Arginine-Rich Proteins. pdf
Xiang S, Gapsys V, Kim HY, Bessonov S, Hsiao HH, Möhlmann S, Klaukien V, Ficner R, Becker S, Urlaub H, Lührmann R, de Groot B, Zweckstetter M.
Structure. 2013 Oct 30. pii: S0969-2126(13)00365-1. doi: 10.1016/j.str.2013.09.014.
RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core. pdf
Anokhina M, Bessonov S, Miao Z, Westhof E, Hartmuth K, Lührmann R.
EMBO J. 2013 Oct 30;32(21):2804-18. doi: 10.1038/emboj.2013.198.
Structural determinants and mechanism of mammalian CRM1 allostery. pdf
Dölker, N., Blanchet, C.E., Voß, B., Haselbach, D., Kappel , C., Monecke,T., Svergun, D.I., Stark, H., Ficner, R., Zachariae, U., Grubmüller, H.and Dickmanns, A. .
Structure. 2013 Aug 6;21(8):1350-60. doi: 10.1016/j.str.2013.05.015.
Predicting the rotational tumbling of dynamic multidomain proteins and supramolecular complexes. pdf
Rezaei-Ghaleh N, Klama F, Munari F, Zweckstetter M.
Angew Chem Int Ed Engl. 2013 Oct 18;52(43):11410-4. doi: 10.1002/anie.201305094.
Sub-ångström-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate. pdf
Lüdtke S, Neumann P, Erixon KM, Leeper F, Kluger R, Ficner R, Tittmann K.
Nat Chem. 2013 Sep;5(9):762-7. doi: 10.1038/nchem.1728.
Observation of a stable carbene at the active site of a thiamin enzyme. pdf
Meyer D, Neumann P, Ficner R, Tittmann K
Nat Chem Biol. 2013 Aug;9(8):488-90. doi: 10.1038/nchembio.1275.
Inhibition of RNA helicase Brr2 by the C-terminal tail of the spliceosomal protein Prp8. pdf
Mozaffari-Jovin S, Wandersleben T, Santos KF, Will CL, Lührmann R, Wahl MC.
Science. 2013 Jul 5;341(6141):80-4. doi: 10.1126/science.1237515.
Molecular dissection of step 2 catalysis of yeast pre-mRNA splicing investigated in a purified system. pdf
Ohrt T, Odenwälder P, Dannenberg J, Prior M, Warkocki Z, Schmitzová J, Karaduman R, Gregor I, Enderlein J, Fabrizio P, Lührmann R.
RNA. 2013 Jul;19(7):902-15. doi: 10.1261/rna.039024.113.
Essential genes in Bacillus subtilis: a re-evaluation after ten years. pdf
Commichau FM, Pietack N, Stülke J.
Mol Biosyst. 2013 Jun 7;9(6):1068-75. doi: 10.1039/c3mb25595f.
Qualitative and quantitative characterization of protein-phosphoinositide interactions with liposome-based methods. pdf
Busse RA, Scacioc A, Hernandez JM, Krick R, Stephan M, Janshoff A, Thumm M, Kühnel K.
Autophagy. 2013 May 1;9(5):770-7. doi: 10.4161/auto.23978.
conF and conJ contribute to conidia germination and stress response in the filamentous fungus Aspergillus nidulans.pdf
Suzuki S, Sarikaya Bayram O, Bayram O, Braus GH.
Fungal Genet Biol. 2013 May 1. pii: S1087-1845(13)00078-9. doi: 10.1016/j.fgb.2013.04.008.
Dynamic localization of a transcription factor in Bacillus subtilis: The LicT antiterminator relocalizes in response to inducer availability. pdf
Rothe FM, Wrede C, Lehnik-Habrink M, Görke B, Stülke J.
J Bacteriol. 2013 May;195(10):2146-54. doi: 10.1128/JB.00117-13.
Alternating sites reactivity is a common feature of thiamin diphosphate-dependent enzymes as evidenced by isothermal titration calorimetry studies of substrate binding.pdf
Schröder-Tittmann K, Meyer D, Arens J, Wechsler C, Tietzel M, Golbik R, Tittmann k.
Biochemistry. 2013 Apr 16;52(15):2505-7. doi: 10.1021/bi301591e.
Structural plasticity in human heterochromatin protein 1β. pdf
Munari F, Rezaei-Ghaleh N, Xiang S, Fischle W, Zweckstetter M.
PLoS One. 2013 Apr 9;8(4):e60887. doi: 10.1371/journal.pone.0060887.
Dual use of GTP hydrolysis by elongation factor G on the ribosome. pdf
Carlos E. Cunha, Riccardo Belardinelli, Frank Peske, Wolf Holtkamp, Wolfgang Wintermeyer, Marina V. Rodnina
Translation 2013; 1:e24315; http://dx.doi.org/10.4161/trla.24315
Signal recognition initiates reorganization of the presequence translocase during protein import. pdf
Lytovchenko O, Melin J, Schulz C, Kilisch M, Hutu DP, Rehling P.
EMBO J. 2013 Mar 20;32(6):886-98. doi: 10.1038/emboj.2013.23.
Control of Multicellular Development by the Physically Interacting Deneddylases DEN1/DenA and COP9 Signalosome. pdf
Christmann M, Schmaler T, Gordon C, Huang X, Bayram O, Schinke J, Stumpf S, Dubiel W, Braus GH.
PLoS Genet. 2013 Feb;9(2):e1003275. doi: 10.1371/journal.pgen.1003275.
Dissection of the factor requirements for spliceosome disassembly and the elucidation of its dissociation products using a purified splicing system. pdf
Fourmann JB, Schmitzová J, Christian H, Urlaub H, Ficner R, Boon KL, Fabrizio P, Lührmann R.
Genes Dev. 2013 Feb 15;27(4):413-28. doi: 10.1101/gad.207779.112.
Burial of the polymorphic residue 129 in amyloid fibrils of prion stop mutants. pdf
Skora L, Fonseca-Ornelas L, Hofele RV, Riedel D, Giller K, Watzlawik J, Schulz-Schaeffer WJ, Urlaub H, Becker S, Zweckstetter M.
J Biol Chem. 2013 Feb 1;288(5):2994-3002. doi: 10.1074/jbc.M112.423715

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2012

The Prp8 RNase H-like domain inhibits Brr2-mediated U4/U6 snRNA unwinding by blocking Brr2 loading onto the U4 snRNA. pdf
Mozaffari-Jovin S, Santos KF, Hsiao HH, Will CL, Urlaub H, Wahl MC, Lührmann R.
Genes Dev. 2012 Nov 1;26(21):2422-34. doi: 10.1101/gad.200949.112.
DEAD-Box RNA helicases in Bacillus subtilis have multiple functions and act independently from each other. pdf
Lehnik-Habrink M, Rempeters L, Kovács ÁT, Wrede C, Baierlein C, Krebber H, Kuipers OP, Stülke J.
J Bacteriol. 2013 Feb;195(3):534-44. doi: 10.1128/JB.01475-12.
Characterization of the velvet regulators in Aspergillus fumigatus. pdf
Park HS, Bayram O, Braus GH, Kim SC, Yu JH.
Mol Microbiol. 2012 Nov;86(4):937-53. doi: 10.1111/mmi.12032.
Structural analysis of the C-terminal domain of the spliceosomal helicase Prp22. pdf
Kudlinzki D, Schmitt A, Christian H, Ficner R.
Biol Chem. 2012 Sep 8;393(10):1131-40. doi: 10.1515/hsz-2012-0158.
Determinants of interaction specificity of the Bacillus subtilis GlcT antitermination protein: functionality and phosphorylation specificity depend on the arrangement of the regulatory domains. pdf
Himmel S, Zschiedrich CP, Becker S, Hsiao HH, Wolff S, Diethmaier C, Urlaub H, Lee D, Griesinger C, Stülke J..
J Biol Chem. 2012 Aug 10;287(33):27731-42. doi: 10.1074/jbc.M112.388850.
MITRAC Links Mitochondrial Protein Translocation to Respiratory-Chain Assembly and Translational Regulation. pdf
Mick DU, Dennerlein S, Wiese H, Reinhold R, Pacheu-Grau D, Lorenzi I, Sasarman F, Weraarpachai W, Shoubridge EA, Warscheid B, Rehling P.
Cell. 2012 Dec 21;151(7):1528-41. doi: 10.1016/j.cell.2012.11.053.
The channel-forming Sym1 protein is transported by the TIM23 complex in a presequence-independent manner. pdf
Reinhold R, Krüger V, Meinecke M, Schulz C, Schmidt B, Grunau SD, Guiard B, Wiedemann N, van der Laan M, Wagner R, Rehling P, Dudek J.
Mol Cell Biol. 2012 Dec;32(24):5009-21. doi: 10.1128/MCB.00843-12
Structural basis for functional cooperation between tandem helicase cassettes in Brr2-mediated remodeling of the spliceosome. pdf
Santos KF, Jovin SM, Weber G, Pena V, Lührmann R, Wahl MC.
Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17418-23. doi: 10.1073/pnas.1208098109.
It takes two to tango: PROPPINs use two phosphoinositide-binding sites. pdf
Thumm M, Busse RA, Scacioc A, Stephan M, Janshoff A, Kühnel K, Krick R.
Autophagy. 2012 Oct 15;9(1). doi: 10.1073/pnas.1205128109
Methylation of lysine 9 in histone H3 directs alternative modes of highly dynamic interaction of heterochromatin protein hHP1β with the nucleosome. pdf
Munari F, Soeroes S, Zenn HM, Schomburg A, Kost N, Schröder S, Klingberg R, Rezaei-Ghaleh N, Stützer A, Gelato KA, Walla PJ, Becker S, Schwarzer D, Zimmermann B, Fischle W, Zweckstetter M.
J Biol Chem. 2012 Sep 28;287(40):33756-65.
DExD/H-box RNA helicases in ribosome biogenesis. pdf
Martin R, Straub AU, Doebele C, Bohnsack MT.
RNA Biol. 2013 Jan;10(1):4-18. doi: 10.4161/rna.21879
The Aspergillus nidulans MAPK Module AnSte11-Ste50-Ste7-Fus3 Controls Development and Secondary Metabolism pdf
Özgür Bayram, Özlem Sarikaya Bayram, Yasar Luqman Ahmed, Jun-ichi Maruyama, Oliver Valerius, Silvio O. Rizzoli, Ralf Ficner, Stefan Irniger, Gerhard H. Braus
PLoS Genet. 2012 Jul;8(7):e1002816., doi:10.1371/journal.pgen.1002816
Structural and functional characterization of the two phosphoinositide binding sites of PROPPINs, a β-propeller protein family. pdf
Roswitha Kricka, Ricarda A. Busseb, Andreea Scaciocb, Milena Stephanc, Andreas Janshoffc, Michael Thumm, Karin Kühnel
Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):E2042-9. doi: 10.1073/pnas.1205128109
Prp2-mediated protein rearrangements at the catalytic core of the spliceosome as revealed by dcFCCS. pdf
Ohrt T, Prior M, Dannenberg J, Odenwälder P, Dybkov O, Rasche N, Schmitzová J, Gregor I, Fabrizio P, Enderlein J, Lührmann R.
RNA. 2012 Jun;18(6):1244-56. doi: 10.1261/rna.033316.112.
RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases.
Martin Lehnik-Habrink, Richard J. Lewis, Ulrike Mäder and Jörg Stülke pdf
Mol Microbiol. 2012 84(6), 1005–1017, doi:10.1111/j.1365-2958.2012.08072.x
The COP9 signalosome counteracts the accumulation of cullin SCF ubiquitin E3 RING ligases during fungal development. pdf
von Zeska Kress MR, Harting R, Bayram O, Christmann M, Irmer H, Valerius O, Schinke J, Goldman GH, Braus GH.
Mol Microbiol. 2012 Mar;83(6):1162-77. doi: 10.1111/j.1365-2958.2012.07999.x.
Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre. pdf
Rasche N, Dybkov O, Schmitzová J, Akyildiz B, Fabrizio P, Lührmann R.
EMBO J. 2012 Mar 21;31(6):1591-604. doi: 10.1038/emboj.2011.502.
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2011

Tim50's presequence receptor domain is essential for signal driven transport across the TIM23 complex. pdf
Schulz C, Lytovchenko O, Melin J, Chacinska A, Guiard B, Neumann P, Ficner R, Jahn O, Schmidt B, Rehling P.
J Cell Biol. 2011 Nov 14;195(4):643-56. doi: 10.1083/jcb.201105098.
A Novel Factor Controlling Bistability in Bacillus subtilis: The YmdB Protein Affects Flagellin Expression and Biofilm Formation. pdf
Diethmaier C, Pietack N, Gunka K, Wrede C, Lehnik-Habrink M, Herzberg C, Hübner S, Stülke J.
J Bacteriol. 2011 Nov;193(21):5997-6007. doi: 10.1128/JB.05360-11.
The B-cell antigen receptor signals through a preformed transducer module of SLP65 and CIN85. pdf
Thomas Oellerich, Vanessa Bremes, Konstantin Neumann, Hanibal Bohnenberger, Kai Dittmann, He-Hsuan Hsiao, Michael Engelke, Tim Schnyder, Facundo Batista, Henning Urlaub and Jürgen Wienands
The EMBO Journal, 5 August 2011; doi:10.1038/emboj.2011.251
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. pdf
Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J.
Mol Microbiol., 4 Aug 2011; doi: 10.1111/j.1365-2958.2011.07777.
RNase Y in Bacillus subtilis: a natively disordered protein that is the functional equivalent to RNase E from Escherichia coli. pdf
Lehnik-Habrink M, Newman J, Rothe FM, Solovyova AS, Rodrigues C, Herzberg C, Commichau FM, Lewis RJ, Stülke J.
J Bacteriol, 2011 Oct;193(19):5431-41. doi: 10.1128/JB.05500-11.
Ran-dependent nuclear export mediators: a structural perspective. pdf
Güttler T, Görlich D.
EMBO J. 2011 Aug 31;30(17):3457-74. doi: 10.1038/emboj.2011.287.
The mRNA export factor Npl3 mediates the nuclear export of large ribosomal subunits. pdf
Hackmann A, Gross T, Baierlein C, Krebber H.
EMBO Rep. 2011 Sep 30;12(10):1024-31. doi: 10.1038/embor.2011.155.
The signaling tool box for tyrosine-based costimulation of lymphocytes. pdf
Engels N, Wienands J.
Curr Opin Immunol. 2011 Jun;23(3):324-9. doi: 10.1016/j.coi.2011.01.005.
Spatiotemporal resolution of Ca2+ signaling events by real time imaging of single B cells. pdf
Hanibal Bohnenberger, Thomas Oellerich, Michael Engelke, He-Hsuan Hsiao, Henning Urlaub, Jürgen Wienands
European journal of immunology, 25 May 2011; doi: 10.1002/eji.201041326
Prevention of cross-talk in conserved regulatory systems: identification of specificity determinants in RNA-binding anti-termination proteins of the BglG family. pdf
Hübner S, Declerck N, Diethmaier C, Le Coq D, Aymerich S, Stülke J.
Nucleic Acids Res, May 2011; 39(10):4360-72. doi: 10.1093/nar/gkr021
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