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RNA helicase-mediated regulation of snoRNP dynamics on pre-ribosomes and rRNA 2'-O-methylation. pdf
Aquino GR, Krogh N, Hackert P, Martin R, Davila Gallesio J, van Nues RW, Schneider C, Watkins NJ, Nielsen H, Bohnsack KE, Bohnsack MT.
Nucleic Acids Res. 2021 Apr 19;49(7):4066-4084. doi: 10.1093/nar/gkab159.
The RNA-binding protein FUS is chaperoned and imported into the nucleus by a network of import receptors.pdf
Baade I, Hutten H, Sternburg EL, Pörschke M, Hofweber M, Dormann D, Kehlenbach RH.
J Biol Chem. 2021 Apr 12;100659. doi: 10.1016/j.jbc.2021.100659. Online ahead of print.
The structure of Prp2 bound to RNA and ADP-BeF 3- reveals structural features important for RNA unwinding by DEAH-box ATPases.pdf
Hamann F, Zimmerningkat LC, Becker RA, Garbers TB, Neumann P, Hub JS, Ficner R.
Acta Crystallogr D Struct Biol. 2021 Apr 1;77(Pt 4):496-509. doi: 10.1107/S2059798321001194. Epub 2021 Mar 30.
A nuclear export sequence promotes CRM1-dependent targeting of the nucleoporin Nup214 to the nuclear pore complex.pdf
Hamed M, Caspar B, Port SA, Kehlenbach RH.
J Cell Sci. 2021 Mar 26;134(6):jcs258095. doi: 10.1242/jcs.258095.
Crystal structure of human CRM1, covalently modified by 2-mercaptoethanol on Cys528, in complex with RanGTP.pdf
Shaikhqasem A, Schmitt K, Valerius O, Ficner R.
Acta Crystallogr F Struct Biol Commun. 2021 Mar 1;77(Pt 3):70-78. doi: 10.1107/S2053230X2100203X. Epub 2021 Mar 3.
Ion type and valency differentially drive vimentin tetramers into intermediate filaments or higher order assemblies.pdf
Denz M, Marschall M, Herrmann H, Köster S.
Soft Matter. 2021 Jan 28;17(4):870-878. doi: 10.1039/d0sm01659d. Epub 2020 Nov 25.
Disease-Associated Tau Phosphorylation Hinders Tubulin Assembly within Tau Condensates.pdf
Savastano A, Flores D, Kadavath H, Biernat J, Mandelkow E, Zweckstetter M.
Angew Chem Int Ed Engl. 2021 Jan 11;60(2):726-730. doi: 10.1002/anie.202011157. Epub 2020 Nov 9.
Nuclear SR-protein mediated mRNA quality control is continued in cytoplasmic nonsense-mediated decay.pdf
Grosse S, Lu Y-Y, Coban I, Neumann B, Krebber H.
RNA Biol. 2021 Jan 7;1-18. doi: 10.1080/15476286.2020.1851506. Online ahead of print
Post-translational modifications soften vimentin intermediate filaments.pdf
Kraxner J, Lorenz C, Menzel J, Parfentev I, Silbern I, Denz M, Urlaub H, Schwappach B, Köster S.
Nanoscale. 2021 Jan 7;13(1):380-387. doi: 10.1039/d0nr07322a. Epub 2020 Dec 22.
Regulation of DEAH-box RNA helicases by G-patch proteins. pdf
Bohnsack KE, Ficner R, Bohnsack MT, Jonas S.
Biol Chem. 2021 Jan 6;402(5):561-579. doi: 10.1515/hsz-2020-0338. Print 2021 Apr 27.


Molecular basis of the interaction of Hsp90 with its co-chaperone Hop.pdf
Lott A, Oroz J, Zweckstetter M.
Protein Sci. 2020 Dec;29(12):2422-2432. doi: 10.1002/pro.3969. Epub 2020 Oct 19.
Dual function of GTPBP6 in biogenesis and recycling of human mitochondrial ribosomes.pdf
Lavdovskaia E, Denks K, Nadler F, Steube E, Linden A, Urlaub H, Rodnina MV, Richter-Dennerlein R.
Nucleic Acids Res. 2020 Dec 16;48(22):12929-12942. doi: 10.1093/nar/gkaa1132.
Atomic-resolution protein structure determination by cryo-EM.pdf
Yip KM, Fischer N, Paknia E, Chari A, Stark H.
Nature. 2020 Nov;587(7832):157-161. doi: 10.1038/s41586-020-2833-4. Epub 2020 Oct 21.
Hülle Cells of Aspergillus nidulans with Nuclear Storage and Developmental Backup Functions Are Reminiscent of Multipotent Stem Cells.pdf
Troppens DM, Köhler AM, Schlüter R, Hoppert M, Gerke J, Braus GH.
mBio. 2020 Aug 11;11(4):e01673-20. doi: 10.1128/mBio.01673-20.
Crystal structure of the Rab33B/Atg16L1 effector complex.pdf
Metje-Sprink J, Groffmann J, Neumann P, Barg-Kues B, Ficner R, Kühnel K, Schalk AM, Binotti B.
Sci Rep. 2020 Jul 31;10(1):12956. doi: 10.1038/s41598-020-69637-0.
Characterization of Inhibition Reveals Distinctive Properties for Human and Saccharomyces cerevisiae CRM1.pdf
Shaikhqasem A, Dickmanns A, Neumann P, Ficner R.
J Med Chem. 2020 Jul 23;63(14):7545-7558. doi: 10.1021/acs.jmedchem.0c00143. Epub 2020 Jul 7.
Molecular architecture of the human 17S U2 snRNP.pdf
Zhang Z, Will CL, Bertram K, Dybkov O, Hartmuth K, Agafonov DE, Hofele R, Urlaub H, Kastner B, Lührmann R, Stark H.
Nature. 2020 Jul;583(7815):310-313. doi: 10.1038/s41586-020-2344-3. Epub 2020 Jun 3.
Atg21 organizes Atg8 lipidation at the contact of the vacuole with the phagophore.pdf
Munzel L, Neumann P, Otto FB, Krick R, Metje-Sprink J, Kroppen B, Karedla N, Enderlein J, Meinecke M, Ficner R, Thumm M.
Autophagy. 2020 Jun 9;1-21. doi: 10.1080/15548627.2020.1766332. Online ahead of print.
A cross-linking mass spectrometry approach defines protein interactions in yeast mitochondria. pdf
Linden A, Deckers M, Parfentev I, Pflanz R, Homberg B, Neumann P, Ficner R, Rehling P, Urlaub H.
Mol Cell Proteomics. 2020 Apr 24. pii: mcp.RA120.002028. doi: 10.1074/mcp.RA120.002028.
Bayesian inference of chromatin structure ensembles from population-averaged contact data. pdf
Carstens S, Nilges M, Habeck M.
Proc Natl Acad Sci U S A. 2020 Apr 7;117(14):7824-7830. doi: 10.1073/pnas.1910364117. Epub 2020 Mar 19.
Determination of Complex Small-Molecule Structures Using Molecular Alignment Simulation. pdf
Ibáñez de Opakua A, Klama F, Ndukwe IE, Martin GE, Williamson RT, Zweckstetter M.
Angew Chem Int Ed Engl. 2020 Apr 6;59(15):6172-6176. doi: 10.1002/anie.202000311. Epub 2020 Feb 24.
The Molecular Basis of the Interaction of Cyclophilin A with α-Synuclein. pdf
Favretto F, Baker JD, Strohäker T, Andreas LB, Blair LJ, Becker S, Zweckstetter M.
Angew Chem Int Ed Engl. 2020 Mar 27;59(14):5643-5646. doi: 10.1002/anie.201914878. Epub 2020 Jan 29.
Discovery of a Regulatory Subunit of the Yeast Fatty Acid Synthase. pdf
Singh K, Graf B, Linden A, Sautner V, Urlaub H, Tittmann K, Stark H, Chari A.
Cell. 2020 Mar 19;180(6):1130-1143.e20. doi: 10.1016/j.cell.2020.02.034. Epub 2020 Mar 10.
From TOM to the TIM23 complex – handing over of a precursor. pdf
Callegari S, Cruz-Zaragoza LD, Rehling P.
Biol Chem. 2020 Mar 9. pii: /j/bchm.ahead-of-print/hsz-2020-0101/hsz-2020-0101.xml. doi: 10.1515/hsz-2020-0101.
Tripartite phase separation of two signal effectors with vesicles priming B cell responsiveness. pdf
Wong LE, Bhatt A, Erdmann PS, Hou Z, Maier J, Pirkuliyeva S, Engelke M, Becker S, Plitzko J, Wienands J, Griesinger C.
Nat Commun. 2020 Feb 12;11(1):848. doi: 10.1038/s41467-020-14544-1.
Structural analysis of the intrinsically disordered splicing factor Spp2 and its binding to the DEAH-box ATPase Prp2. pdf
Hamann F, Schmitt A, Favretto F, Hofele R, Neumann P, Xiang S, Urlaub H, Zweckstetter M, Ficner R.
Proc Natl Acad Sci U S A. 2020 Feb 11;117(6):2948-2956. doi: 10.1073/pnas.1907960117. Epub 2020 Jan 23.
Dbp5/DDX19 between Translational Readthrough and Nonsense Mediated Decay. pdf
Beißel C, Grosse S, Krebber H.
Int J Mol Sci. 2020 Feb 6;21(3). pii: E1085. doi: 10.3390/ijms21031085.
Into the basket and beyond: the journey of mRNA through the nuclear pore complex. pdf
Ashkenazy-Titelman A, Shav-Tal Y, Kehlenbach RH.
Biochem J. 2020 Jan 17;477(1):23-44. doi: 10.1042/BCJ20190132.
Pol5 is required for recycling of small subunit biogenesis factors and for formation of the peptide exit tunnel of the large ribosomal subunit. pdf
Braun CM, Hackert P, Schmid CE, Bohnsack MT, Bohnsack KE, Perez-Fernandez J.
Nucleic Acids Res. 2020 Jan 10;48(1):405-420. doi: 10.1093/nar/gkz1079.


Active role of elongation factor G in maintaining the mRNA reading frame during translation. pdf
Peng BZ, Bock LV, Belardinelli R, Peske F, Grubmüller H, Rodnina MV.
Sci Adv. 2019 Dec 20;5(12):eaax8030. doi: 10.1126/sciadv.aax8030. eCollection 2019 Dec.
Graphene-based metal-induced energy transfer for sub-nanometre optical localization. pdf
Ghosh A, Sharma A, Chizhik AI, Isbaner S, Ruhlandt D, Tsukanov R, Gregor I, Karedla N, Enderlein J.
Nature Photonics | VOL 13 | DECEMBER 2019 | 860–865 | www.nature.com/naturephotonics.
Thermodynamic control of -1 programmed ribosomal frameshifting. pdf
Bock LV, Caliskan N, Korniy N, Peske F, Rodnina MV, Grubmüller H.
Nat Commun. 2019 Oct 10;10(1):4598. doi: 10.1038/s41467-019-12648-x.
The nuclear pore proteins Nup88/214 and T-cell acute lymphatic leukemia-associated NUP214 fusion proteins regulate Notch signaling. pdf
Kindermann B, Valkova C, Krämer A, Perner B, Engelmann C, Behrendt L, Kritsch D, Jungnickel B, Kehlenbach RH, Oswald F, Englert C, Kaether C.
J Biol Chem. 2019 Aug 2;294(31):11741-11750. doi: 10.1074/jbc.RA118.006357. Epub 2019 Jun 11.
Structural and Functional Analyses of the Human PDH Complex Suggest a ‘‘Division-of-Labor’’ Mechanism by Local E1 and E3 Clusters. pdf
Prajapati S, Haselbach D, Wittig S, Patel MS, Chari A, Schmidt C, Stark H, Tittmann K.
Structure. 2019 Jul 2;27(7):1124-1136.e4. doi: 10.1016/j.str.2019.04.009. Epub 2019 May 23.
Integration of Fungus-Specific CandA-C1 into a Trimeric CandA Complex Allowed Splitting of the Gene for the Conserved Receptor Exchange Factor of CullinA E3 Ubiquitin Ligases in Aspergilli. pdf
Köhler AM, Harting R, Langeneckert AE, Valerius O, Gerke J, Meister C, Strohdiek A, Braus GH.
mBio. 2019 Jun 18;10(3). pii: e01094-19. doi: 10.1128/mBio.01094-19.
Nuclear Pre-snRNA Export Is an Essential Quality Assurance Mechanism for Functional Spliceosomes. pdf
Becker D, Hirsch AG, Bender L, Lingner T, Salinas G, Krebber H.
Cell Rep. 2019 Jun 11;27(11):3199-3214.e3. doi: 10.1016/j.celrep.2019.05.031.
EF-G-induced ribosome sliding along the noncoding mRNA.pdf
Klimova M, Senyushkina T, Samatova E, Peng BZ, Pearson M, Peske F, Rodnina MV.
Sci Adv. 2019 Jun 5;5(6):eaaw9049. doi: 10.1126/sciadv.aaw9049. eCollection 2019 Jun.
Modulation of HIV-1 Gag/Gag-Pol frameshifting by tRNA abundance.pdf
Korniy N, Goyal A, Hoffmann M, Samatova E, Peske F, Pöhlmann S, Rodnina MV.
Nucleic Acids Res. 2019 Jun 4;47(10):5210-5222. doi: 10.1093/nar/gkz202.
Translation termination depends on the sequential ribosomal entry of eRF1 and eRF3. pdf
Beißel C, Neumann B, Uhse S, Hampe I, Karki P, Krebber H.
Nucleic Acids Res. 2019 May 21;47(9):4798-4813. doi: 10.1093/nar/gkz177.
Structural basis for RNA translocation by DEAH-box ATPases. pdf
Hamann F, Enders M, Ficner R.
Nucleic Acids Res. 2019 May 7;47(8):4349-4362. doi: 10.1093/nar/gkz150.
ROMO1 is a constituent of the human presequence translocase required for YME1L protease import. pdf
Richter F, Dennerlein S, Nikolov M, Jans DC, Naumenko N, Aich A, MacVicar T, Linden A, Jakobs S, Urlaub H, Langer T, Rehling P.
J Cell Biol. 2019 Feb 4;218(2):598-614. doi: 10.1083/jcb.201806093. Epub 2018 Dec 31.


RNA helicases mediate structural transitions and compositional changes in pre-ribosomal complexes. pdf
Brüning L, Hackert P, Martin R, Davila Gallesio J, Aquino GRR, Urlaub H, Sloan KE, Bohnsack MT.
Nat Commun. 2018 Dec 19;9(1):5383. doi: 10.1038/s41467-018-07783-w.
Biallelic mutations in nucleoporin NUP88 cause lethal fetal akinesia deformation sequence. pdf
Bonnin E, Cabochette P, Filosa A, Jühlen R, Komatsuzaki S, Hezwani M, Dickmanns A, Martinelli V, Vermeersch M, Supply L, Martins N, Pirenne L, Ravenscroft G, Lombard M, Port S, Spillner C, Janssens S, Roets E, Van Dorpe J, Lammens M, Kehlenbach RH, Ficner R, Laing NG, Hoffmann K, Vanhollebeke B, Fahrenkrog B.
PLoS Genet. 2018 Dec 13;14(12):e1007845. doi: 10.1371/journal.pgen.1007845. eCollection 2018 Dec
Motor recruitment to the TIM23 channel’s lateral gate restricts polypeptide release into the inner membrane. pdf
Schendzielorz AB, Bragoszewski P, Naumenko N, Gomkale R, Schulz C, Guiard B, Chacinska A, Rehling P.
Nat Commun. 2018 Oct 2;9(1):4028. doi: 10.1038/s41467-018-06492-8.
Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting.pdf
Matsumoto S, Caliskan N, Rodnina MV, Murata A, Nakatani K.
Nucleic Acids Res. 2018 Sep 19;46(16):8079-8089. doi: 10.1093/nar/gky689.
The human Obg protein GTPBP10 is involved in mitoribosomal biogenesis. pdf
Lavdovskaia E, Kolander E, Steube E, Mai MM, Urlaub H, Richter-Dennerlein R.
Nucleic Acids Res. 2018 Sep 19;46(16):8471-8482. doi: 10.1093/nar/gky701.
Crystal structure of the spliceosomal DEAH-box ATPase Prp2. pdf
Schmitt A, Hamann F, Neumann P, Ficner R.
Acta Crystallogr D Struct Biol. 2018 Jul 1;74(Pt 7):643-654. doi: 10.1107/S2059798318006356. Epub 2018 Jun 8.
Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism. pdf
Thieme KG, Gerke J, Sasse C, Valerius O, Thieme S, Karimi R, Heinrich AK, Finkernagel F, Smith K, Bode HB, Freitag M, Ram AFJ, Braus GH.
J Cell Biol. 2018 Jul 2;217(7):2329-2340. doi: 10.1083/jcb.201712013. Epub 2018 May 10.
Xpo7 is a broad-spectrum exportin and a nuclear import receptor. pdf
Aksu M, Pleiner T, Karaca S, Kappert C, Dehne HJ, Seibel K, Urlaub H, Bohnsack MT, Görlich D.
J Cell Biol. 2018 Jul 2;217(7):2329-2340. doi: 10.1083/jcb.201712013. Epub 2018 May 10.
Dynamics of ribosomes and release factors during translation termination in E. coli. pdf
Adio S, Sharma H, Senyushkina T, Karki P, Maracci C, Wohlgemuth I, Holtkamp W, Peske F, Rodnina MV.
Elife. 2018 Jun 11;7. pii: e34252. doi: 10.7554/eLife.34252.
Three-dimensional single-molecule localization with nanometer accuracy using Metal-Induced Energy Transfer (MIET) imaging.pdf
Karedla N, Chizhik AM, Stein SC, Ruhlandt D, Gregor I, Chizhik AI, Enderlein J.
J Chem Phys. 2018 May 28;148(20):204201. doi: 10.1063/1.5027074.
Validating Resolution Revolution. pdf
Neumann P, Dickmanns A, Ficner R.
Structure. 2018 May 1;26(5):785-795.e4. doi: 10.1016/j.str.2018.03.004. Epub 2018 Mar 29.
Fluorescence lifetime correlation spectroscopy: Basics and applications.pdf
Ghosh A, Karedla N, Thiele JC, Gregor I, Enderlein J.
Methods. 2018 May 1;140-141:32-39. doi: 10.1016/j.ymeth.2018.02.009. Epub 2018 Feb 16.
Structural basis for the regulatory interaction of the methylglyoxal synthase MgsA with the carbon flux regulator Crh in Bacillus subtilis. pdf
Dickmanns A, Zschiedrich CP, Arens J, Parfentev I, Gundlach J, Hofele R, Neumann P, Urlaub H, Görke B, Ficner R, Stülke J.
J Biol Chem. 2018 Apr 20;293(16):5781-5792. doi: 10.1074/jbc.RA117.001289. Epub 2018 Mar 7.
Sensitivity-Enhanced Four-Dimensional Amide-Amide Correlation NMR Experiments for Sequential Assignment of Proline-Rich Disordered Proteins. pdf
Wong LE, Maier J, Wienands J, Becker S, Griesinger C.
J Am Chem Soc. 2018 Mar 14;140(10):3518-3522. doi: 10.1021/jacs.8b00215. Epub 2018 Mar 6.
Sem1 links proteasome stability and specificity to multicellular development. pdf
Kolog Gulko M, Heinrich G, Gross C, Popova B, Valerius O, Neumann P, Ficner R, Braus GH.
PLoS Genet. 2018 Feb 5;14(2):e1007141.doi: 10.1371/journal.pgen.1007141. eCollection 2018 Feb.


Quantifying Microsecond Transition Times Using Fluorescence Lifetime Correlation Spectroscopy.pdf
Ghosh A, Isbaner S, Veiga-Gutiérrez M, Gregor I, Enderlein J, Karedla N.
J Phys Chem Lett. 2017 Dec 21;8(24):6022-6028. doi: 10.1021/acs.jpclett.7b02707. Epub 2017 Dec 4
Three-Dimensional Reconstruction of Nuclear Envelope Architecture Using Dual-Color Metal-Induced Energy Transfer Imaging.pdf
Chizhik AM, Ruhlandt D, Pfaff J, Karedla N, Chizhik AI, Gregor I, Kehlenbach RH, Enderlein J.
ACS Nano. 2017 Dec 26;11(12):11839-11846. doi: 10.1021/acsnano.7b04671.
Capturing the Asc1p/RACK1 microenvironment at the head region of the 40S ribosome with quantitative BioID.pdf
Opitz N, Schmitt K, Hofer-Pretz V, Neumann B, Krebber H, Braus GH, Valerius O.
Mol Cell Proteomics. 2017 Dec;16(12):2199-2218. doi: 10.1074/mcp.M116.066654.
Slam protein dictates subcellular localization and translation of its own mRNA.pdf
Yan S, Acharya S, Gröning S, Großhans J.
PLoS Biol. 2017 Dec 4;15(12):e2003315. doi: 10.1371/journal.pbio.2003315.
The RES complex is required for efficient transformation of the precatalytic B spliceosome into an activated Bact complex.pdf
Bao P, Will CL, Urlaub H, Boon KL, Lührmann R.
Genes Dev. 2017 Dec 1;31(23-24):2416-2429. doi: 10.1101/gad.308163.117. Epub 2018 Jan 12
Mechanism of Transcription Anti-termination in Human Mitochondria.pdf
Hillen HS, Parshin AV, Agaronyan K, Morozov YI, Graber JJ, Chernev A, Schwinghammer K, Urlaub H, Anikin M, Cramer P, Temiakov D.
Cell. 2017 Nov 16;171(5):1082-1093.e13. doi: 10.1016/j.cell.2017.09.035.
Structural Basis of Mitochondrial Transcription Initiation.pdf
Hillen HS, Morozov YI, Sarfallah A, Temiakov D, Cramer P.
Cell. 2017 Nov 16;171(5):1072-1081.e10. doi: 10.1016/j.cell.2017.10.036.
Structures of transcription pre-initiation complex with TFIIH and Mediator.pdf
Schilbach S, Hantsche M, Tegunov D, Dienemann C, Wigge C, Urlaub H, Cramer P.
Nature. 2017 Nov 9;551(7679):204-209. doi: 10.1038/nature24282.
INA complex liaises the F1Fo-ATP synthase membrane motor modules.pdf
Naumenko N, Morgenstern M, Rucktäschel R, Warscheid B, Rehling P.
Nat Commun. 2017 Nov 1;8(1):1237. doi: 10.1038/s41467-017-01437-z.
Effect of Fusidic Acid on the Kinetics of Molecular Motions During EF-G-Induced Translocation on the Ribosome.pdf
Belardinelli R, Rodnina MV.
Sci Rep. 2017 Sep 5;7(1):10536. doi: 10.1038/s41598-017-10916-8.
Tuning the ribosome: the influence of rRNA modification on eukaryotic ribosome biogenesis and function.pdf
Sloan KE, Warda AS, Sharma S, Entian KD, Lafontaine DL, Bohnsack MT.
RNA Biol. 2017 Sep 2;14(9):1138-1152. doi: 10.1080/15476286.2016.1259781.
Cation selectivity of the presequence translocase channel Tim23 is crucial for efficient protein import.pdf
Denkert N, Schendzielorz AB, Barbot M, Versemann L, Richter F, Rehling P, Meinecke M.
Elife. 2017 Aug 31;6. pii: e28324. doi: 10.7554/eLife.28324.
Data-driven coarse graining of large biomolecular structures.pdf
Chen YL, Habeck M.
PLoS One. 2017 Aug 17;12(8):e0183057. doi: 10.1371/journal.pone.0183057.
Liquid-liquid phase separation of the microtubule-binding repeats of the Alzheimer-related protein Tau.pdf
Ambadipudi S, Biernat J, Riedel D, Mandelkow E, Zweckstetter M.
Nat Commun. 2017 Aug 17;8(1):275. doi: 10.1038/s41467-017-00480-0.
Cryo-EM structure of a pre-catalytic human spliceosome primed for activation.pdf
Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, Lührmann R, Stark H.
Cell. 2017 Aug 10;170(4):701-713.e11. doi: 10.1016/j.cell.2017.07.011.
Studying structure and function of spliceosomal helicases.pdf
Ficner R, Dickmanns A, Neumann P.
Methods. 2017 Aug 1;125:63-69. doi: 10.1016/j.ymeth.2017.06.028.
Quick or Quality? How mRNA escapes nuclear quality control during stress.pdf
Zander G, Krebber H.
RNA Biol. 2017 Jul 14:1-7. doi: 10.1080/15476286.2017.1345835.
Ribosome rearrangements at the onset of translational bypassing.pdf
Agirrezabala X, Samatova E, Klimova M, Zamora M, Gil-Carton G, Rodnina MV, Valle M.
Sci Adv. 2017 Jun 7;3(6):e1700147. doi: 10.1126/sciadv.1700147.
Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex.pdf
Xu Y, Bernecky C, Lee CT, Maier KC, Schwalb B, Tegunov D, Plitzko JM, Urlaub H, Cramer P.
Nat Commun. 2017 Jun 6;8:15741. doi: 10.1038/ncomms15741.
Long-range allosteric regulation of the human 26S proteasome by 20S proteasome-targeting cancer drugs.pdf
Haselbach D, Schrader J, Lambrecht F, Henneberg F, Chari A, Stark H.
Nat Commun. 2017 May 25;8:15578. doi: 10.1038/ncomms15578.
The highly conserved Asp23 family protein YqhY plays a role in lipid biosynthesis in Bacillus subtilis.pdf
Tödter D, Gunka K, Stülke J.
Front Microbiol. 2017 May 19;8:883. doi: 10.3389/fmicb.2017.00883.
Conditional switch between frameshifting regimes upon translation of dnaX mRNA.pdf
Caliskan N, Wohlgemuth I, Korniy N, Pearson M, Peske F, Rodnina MV.
Mol Cell. 2017 May 18;66(4):558-567.e4. doi: 10.1016/j.molcel.2017.04.023.
Core Mediator structure at 3.4 Å extends model of transcription initiation complex.pdf
Nozawa K, Schneider TR, Cramer P.
Nature. 2017 May 11;545(7653):248-251. doi: 10.1038/nature22328.
The target of the DEAH-box NTP triphosphatase Prp43 in Saccharomyces cerevisiae spliceosomes is the U2 snRNP-intron interaction.pdf
Fourmann JB, Dybkov O, Agafonov DE, Tauchert MJ, Urlaub H, Ficner R, Fabrizio P, Lührmann R.
Elife. 2016 Apr 26;5. pii: e15564. doi: 10.7554/eLife.15564.
Modeling of Biomolecular Assemblies with Cryo-EM Maps.pdf
Habeck M.
Front Mol Biosci. 2017 Mar 22;4:15. doi: 10.3389/fmolb.2017.00015.
Cryo-EM structure of a human spliceosome activated for step 2 of splicing.pdf
Bertram K, Agafonov DE, Liu WT, Dybkov O, Will CL, Hartmuth K, Urlaub H, Kastner B, Stark H, Lührmann R.
Nature. 2017 Feb 16;542(7641):318-323. doi: 10.1038/nature21079.
A novel translational control mechanism involving RNA structures within coding sequences.pdf
Jungfleisch J, Nedialkova D, Dotu I, Sloan KE, Martinez-Bosch N, Brüning L, Raineri E, Navarro P, Bohnsack MT, Leidel SA, Diez J.
Genome Res. 2017 Jan;27(1):95-106. doi: 10.1101/gr.209015.116.
Structural insights into the mechanism of the DEAH-box RNA helicase Prp43.pdf
Tauchert MJ, Fourmann JB, Lührmann R, Ficner R.
Elife. 2017 Jan 16;6. pii: e21510. doi: 10.7554/eLife.21510.
Two distinct membrane potential-dependent steps drive mitochondrial matrix protein translocation.pdf
Schendzielorz AB, Schulz C, Lytovchenko O, Clancy A, Guiard B, Ieva R, van der Laan M, Rehling P.
J Cell Biol. 2017 Jan 2;216(1):83-92. doi: 10.1083/jcb.201607066.


mRNA quality control is bypassed for an immediate export of stress responsive transcripts.pdf
Zander G, Hackmann A, Bender L, Becker D, Lingner T, Salinas G, Krebber H.
Nature. 2016 Dec 12. doi: 10.1038/nature20572.
Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data.pdf
Carstens S, Nilges M, Habeck M.
PLoS Comput Biol. 2016 Dec 27;12(12):e1005292. doi: 10.1371/journal.pcbi.1005292.
Atg8 lipidation is coordinated in a PtdIns3P-dependent manner by the PROPPIN Atg21.pdf
Krick R, Thumm M
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Interaction of the intermembrane space domain of Tim23 protein with mitochondrial membranes.pdf
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Control of the Diadenylate Cyclase CdaS in Bacillus subtilis: An Autoinhibitory Domain Limits c-di-AMP Production. pdf
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Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28. pdf
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J Bacteriol. 2014 Jan;196(2):265-75. doi: 10.1128/JB.00826-13.
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The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κB.  pdf
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Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):960-5. doi: 10.1073/pnas.1215214110.
Propranolol Restricts the Mobility of Single EGF-Receptors on the Cell Surface before Their Internalization. pdf
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Cutting Edge: Feed-Forward Activation of Phospholipase Cγ2 via C2 Domain-Mediated Binding to SLP65. pdf
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J Immunol. 2013 Dec 1;191(11):5354-8. doi: 10.4049/jimmunol.1301326.
Monosome Formation during Translation Initiation Requires the Serine/Arginine-Rich Protein Npl3. pdf
Baierlein C, Hackmann A, Gross T, Henker L, Hinz F, Krebber H.
Mol Cell Biol. 2013 Dec;33(24):4811-23. doi: 10.1128/MCB.00873-13.
A high-speed vertical optical trap for the mechanical testing of living cells at piconewton forces. pdf
Bodensiek K, Li W, Sánchez P, Nawaz S, Schaap IA.
Rev Sci Instrum. 2013 Nov;84(11):113707. doi: 10.1063/1.4832036.
Energy barriers and driving forces in tRNA translocation through the ribosome. pdf
Bock LV, Blau C, Schröder GF, Davydov II, Fischer N, Stark H, Rodnina MV, Vaiana AC, Grubmüller H.
Nat Struct Mol Biol. 2013 Nov 3. doi: 10.1038/nsmb.2690.
Phosphorylation Drives a Dynamic Switch in Serine/Arginine-Rich Proteins. pdf
Xiang S, Gapsys V, Kim HY, Bessonov S, Hsiao HH, Möhlmann S, Klaukien V, Ficner R, Becker S, Urlaub H, Lührmann R, de Groot B, Zweckstetter M.
Structure. 2013 Oct 30. pii: S0969-2126(13)00365-1. doi: 10.1016/j.str.2013.09.014.
RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core. pdf
Anokhina M, Bessonov S, Miao Z, Westhof E, Hartmuth K, Lührmann R.
EMBO J. 2013 Oct 30;32(21):2804-18. doi: 10.1038/emboj.2013.198.
Structural determinants and mechanism of mammalian CRM1 allostery. pdf
Dölker, N., Blanchet, C.E., Voß, B., Haselbach, D., Kappel , C., Monecke,T., Svergun, D.I., Stark, H., Ficner, R., Zachariae, U., Grubmüller, H.and Dickmanns, A. .
Structure. 2013 Aug 6;21(8):1350-60. doi: 10.1016/j.str.2013.05.015.
Predicting the rotational tumbling of dynamic multidomain proteins and supramolecular complexes. pdf
Rezaei-Ghaleh N, Klama F, Munari F, Zweckstetter M.
Angew Chem Int Ed Engl. 2013 Oct 18;52(43):11410-4. doi: 10.1002/anie.201305094.
Sub-ångström-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate. pdf
Lüdtke S, Neumann P, Erixon KM, Leeper F, Kluger R, Ficner R, Tittmann K.
Nat Chem. 2013 Sep;5(9):762-7. doi: 10.1038/nchem.1728.
Observation of a stable carbene at the active site of a thiamin enzyme. pdf
Meyer D, Neumann P, Ficner R, Tittmann K
Nat Chem Biol. 2013 Aug;9(8):488-90. doi: 10.1038/nchembio.1275.
Inhibition of RNA helicase Brr2 by the C-terminal tail of the spliceosomal protein Prp8. pdf
Mozaffari-Jovin S, Wandersleben T, Santos KF, Will CL, Lührmann R, Wahl MC.
Science. 2013 Jul 5;341(6141):80-4. doi: 10.1126/science.1237515.
Molecular dissection of step 2 catalysis of yeast pre-mRNA splicing investigated in a purified system. pdf
Ohrt T, Odenwälder P, Dannenberg J, Prior M, Warkocki Z, Schmitzová J, Karaduman R, Gregor I, Enderlein J, Fabrizio P, Lührmann R.
RNA. 2013 Jul;19(7):902-15. doi: 10.1261/rna.039024.113.
Essential genes in Bacillus subtilis: a re-evaluation after ten years. pdf
Commichau FM, Pietack N, Stülke J.
Mol Biosyst. 2013 Jun 7;9(6):1068-75. doi: 10.1039/c3mb25595f.
Qualitative and quantitative characterization of protein-phosphoinositide interactions with liposome-based methods. pdf
Busse RA, Scacioc A, Hernandez JM, Krick R, Stephan M, Janshoff A, Thumm M, Kühnel K.
Autophagy. 2013 May 1;9(5):770-7. doi: 10.4161/auto.23978.
conF and conJ contribute to conidia germination and stress response in the filamentous fungus Aspergillus nidulans.pdf
Suzuki S, Sarikaya Bayram O, Bayram O, Braus GH.
Fungal Genet Biol. 2013 May 1. pii: S1087-1845(13)00078-9. doi: 10.1016/j.fgb.2013.04.008.
Dynamic localization of a transcription factor in Bacillus subtilis: The LicT antiterminator relocalizes in response to inducer availability. pdf
Rothe FM, Wrede C, Lehnik-Habrink M, Görke B, Stülke J.
J Bacteriol. 2013 May;195(10):2146-54. doi: 10.1128/JB.00117-13.
Alternating sites reactivity is a common feature of thiamin diphosphate-dependent enzymes as evidenced by isothermal titration calorimetry studies of substrate binding.pdf
Schröder-Tittmann K, Meyer D, Arens J, Wechsler C, Tietzel M, Golbik R, Tittmann k.
Biochemistry. 2013 Apr 16;52(15):2505-7. doi: 10.1021/bi301591e.
Structural plasticity in human heterochromatin protein 1β. pdf
Munari F, Rezaei-Ghaleh N, Xiang S, Fischle W, Zweckstetter M.
PLoS One. 2013 Apr 9;8(4):e60887. doi: 10.1371/journal.pone.0060887.
Dual use of GTP hydrolysis by elongation factor G on the ribosome. pdf
Carlos E. Cunha, Riccardo Belardinelli, Frank Peske, Wolf Holtkamp, Wolfgang Wintermeyer, Marina V. Rodnina
Translation 2013; 1:e24315; http://dx.doi.org/10.4161/trla.24315
Signal recognition initiates reorganization of the presequence translocase during protein import. pdf
Lytovchenko O, Melin J, Schulz C, Kilisch M, Hutu DP, Rehling P.
EMBO J. 2013 Mar 20;32(6):886-98. doi: 10.1038/emboj.2013.23.
Control of Multicellular Development by the Physically Interacting Deneddylases DEN1/DenA and COP9 Signalosome. pdf
Christmann M, Schmaler T, Gordon C, Huang X, Bayram O, Schinke J, Stumpf S, Dubiel W, Braus GH.
PLoS Genet. 2013 Feb;9(2):e1003275. doi: 10.1371/journal.pgen.1003275.
Dissection of the factor requirements for spliceosome disassembly and the elucidation of its dissociation products using a purified splicing system. pdf
Fourmann JB, Schmitzová J, Christian H, Urlaub H, Ficner R, Boon KL, Fabrizio P, Lührmann R.
Genes Dev. 2013 Feb 15;27(4):413-28. doi: 10.1101/gad.207779.112.
Burial of the polymorphic residue 129 in amyloid fibrils of prion stop mutants. pdf
Skora L, Fonseca-Ornelas L, Hofele RV, Riedel D, Giller K, Watzlawik J, Schulz-Schaeffer WJ, Urlaub H, Becker S, Zweckstetter M.
J Biol Chem. 2013 Feb 1;288(5):2994-3002. doi: 10.1074/jbc.M112.423715



The Prp8 RNase H-like domain inhibits Brr2-mediated U4/U6 snRNA unwinding by blocking Brr2 loading onto the U4 snRNA. pdf
Mozaffari-Jovin S, Santos KF, Hsiao HH, Will CL, Urlaub H, Wahl MC, Lührmann R.
Genes Dev. 2012 Nov 1;26(21):2422-34. doi: 10.1101/gad.200949.112.
DEAD-Box RNA helicases in Bacillus subtilis have multiple functions and act independently from each other. pdf
Lehnik-Habrink M, Rempeters L, Kovács ÁT, Wrede C, Baierlein C, Krebber H, Kuipers OP, Stülke J.
J Bacteriol. 2013 Feb;195(3):534-44. doi: 10.1128/JB.01475-12.
Characterization of the velvet regulators in Aspergillus fumigatus. pdf
Park HS, Bayram O, Braus GH, Kim SC, Yu JH.
Mol Microbiol. 2012 Nov;86(4):937-53. doi: 10.1111/mmi.12032.
Structural analysis of the C-terminal domain of the spliceosomal helicase Prp22. pdf
Kudlinzki D, Schmitt A, Christian H, Ficner R.
Biol Chem. 2012 Sep 8;393(10):1131-40. doi: 10.1515/hsz-2012-0158.
Determinants of interaction specificity of the Bacillus subtilis GlcT antitermination protein: functionality and phosphorylation specificity depend on the arrangement of the regulatory domains. pdf
Himmel S, Zschiedrich CP, Becker S, Hsiao HH, Wolff S, Diethmaier C, Urlaub H, Lee D, Griesinger C, Stülke J..
J Biol Chem. 2012 Aug 10;287(33):27731-42. doi: 10.1074/jbc.M112.388850.
MITRAC Links Mitochondrial Protein Translocation to Respiratory-Chain Assembly and Translational Regulation. pdf
Mick DU, Dennerlein S, Wiese H, Reinhold R, Pacheu-Grau D, Lorenzi I, Sasarman F, Weraarpachai W, Shoubridge EA, Warscheid B, Rehling P.
Cell. 2012 Dec 21;151(7):1528-41. doi: 10.1016/j.cell.2012.11.053.
The channel-forming Sym1 protein is transported by the TIM23 complex in a presequence-independent manner. pdf
Reinhold R, Krüger V, Meinecke M, Schulz C, Schmidt B, Grunau SD, Guiard B, Wiedemann N, van der Laan M, Wagner R, Rehling P, Dudek J.
Mol Cell Biol. 2012 Dec;32(24):5009-21. doi: 10.1128/MCB.00843-12
Structural basis for functional cooperation between tandem helicase cassettes in Brr2-mediated remodeling of the spliceosome. pdf
Santos KF, Jovin SM, Weber G, Pena V, Lührmann R, Wahl MC.
Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17418-23. doi: 10.1073/pnas.1208098109.
It takes two to tango: PROPPINs use two phosphoinositide-binding sites. pdf
Thumm M, Busse RA, Scacioc A, Stephan M, Janshoff A, Kühnel K, Krick R.
Autophagy. 2012 Oct 15;9(1). doi: 10.1073/pnas.1205128109
Methylation of lysine 9 in histone H3 directs alternative modes of highly dynamic interaction of heterochromatin protein hHP1β with the nucleosome. pdf
Munari F, Soeroes S, Zenn HM, Schomburg A, Kost N, Schröder S, Klingberg R, Rezaei-Ghaleh N, Stützer A, Gelato KA, Walla PJ, Becker S, Schwarzer D, Zimmermann B, Fischle W, Zweckstetter M.
J Biol Chem. 2012 Sep 28;287(40):33756-65.
DExD/H-box RNA helicases in ribosome biogenesis. pdf
Martin R, Straub AU, Doebele C, Bohnsack MT.
RNA Biol. 2013 Jan;10(1):4-18. doi: 10.4161/rna.21879
The Aspergillus nidulans MAPK Module AnSte11-Ste50-Ste7-Fus3 Controls Development and Secondary Metabolism pdf
Özgür Bayram, Özlem Sarikaya Bayram, Yasar Luqman Ahmed, Jun-ichi Maruyama, Oliver Valerius, Silvio O. Rizzoli, Ralf Ficner, Stefan Irniger, Gerhard H. Braus
PLoS Genet. 2012 Jul;8(7):e1002816., doi:10.1371/journal.pgen.1002816
Structural and functional characterization of the two phosphoinositide binding sites of PROPPINs, a β-propeller protein family. pdf
Roswitha Kricka, Ricarda A. Busseb, Andreea Scaciocb, Milena Stephanc, Andreas Janshoffc, Michael Thumm, Karin Kühnel
Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):E2042-9. doi: 10.1073/pnas.1205128109
Prp2-mediated protein rearrangements at the catalytic core of the spliceosome as revealed by dcFCCS. pdf
Ohrt T, Prior M, Dannenberg J, Odenwälder P, Dybkov O, Rasche N, Schmitzová J, Gregor I, Fabrizio P, Enderlein J, Lührmann R.
RNA. 2012 Jun;18(6):1244-56. doi: 10.1261/rna.033316.112.
RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases.
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Mol Microbiol. 2012 84(6), 1005–1017, doi:10.1111/j.1365-2958.2012.08072.x
The COP9 signalosome counteracts the accumulation of cullin SCF ubiquitin E3 RING ligases during fungal development. pdf
von Zeska Kress MR, Harting R, Bayram O, Christmann M, Irmer H, Valerius O, Schinke J, Goldman GH, Braus GH.
Mol Microbiol. 2012 Mar;83(6):1162-77. doi: 10.1111/j.1365-2958.2012.07999.x.
Cwc2 and its human homologue RBM22 promote an active conformation of the spliceosome catalytic centre. pdf
Rasche N, Dybkov O, Schmitzová J, Akyildiz B, Fabrizio P, Lührmann R.
EMBO J. 2012 Mar 21;31(6):1591-604. doi: 10.1038/emboj.2011.502.


Tim50's presequence receptor domain is essential for signal driven transport across the TIM23 complex. pdf
Schulz C, Lytovchenko O, Melin J, Chacinska A, Guiard B, Neumann P, Ficner R, Jahn O, Schmidt B, Rehling P.
J Cell Biol. 2011 Nov 14;195(4):643-56. doi: 10.1083/jcb.201105098.
A Novel Factor Controlling Bistability in Bacillus subtilis: The YmdB Protein Affects Flagellin Expression and Biofilm Formation. pdf
Diethmaier C, Pietack N, Gunka K, Wrede C, Lehnik-Habrink M, Herzberg C, Hübner S, Stülke J.
J Bacteriol. 2011 Nov;193(21):5997-6007. doi: 10.1128/JB.05360-11.
The B-cell antigen receptor signals through a preformed transducer module of SLP65 and CIN85. pdf
Thomas Oellerich, Vanessa Bremes, Konstantin Neumann, Hanibal Bohnenberger, Kai Dittmann, He-Hsuan Hsiao, Michael Engelke, Tim Schnyder, Facundo Batista, Henning Urlaub and Jürgen Wienands
The EMBO Journal, 5 August 2011; doi:10.1038/emboj.2011.251
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. pdf
Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J.
Mol Microbiol., 4 Aug 2011; doi: 10.1111/j.1365-2958.2011.07777.
RNase Y in Bacillus subtilis: a natively disordered protein that is the functional equivalent to RNase E from Escherichia coli. pdf
Lehnik-Habrink M, Newman J, Rothe FM, Solovyova AS, Rodrigues C, Herzberg C, Commichau FM, Lewis RJ, Stülke J.
J Bacteriol, 2011 Oct;193(19):5431-41. doi: 10.1128/JB.05500-11.
Ran-dependent nuclear export mediators: a structural perspective. pdf
Güttler T, Görlich D.
EMBO J. 2011 Aug 31;30(17):3457-74. doi: 10.1038/emboj.2011.287.
The mRNA export factor Npl3 mediates the nuclear export of large ribosomal subunits. pdf
Hackmann A, Gross T, Baierlein C, Krebber H.
EMBO Rep. 2011 Sep 30;12(10):1024-31. doi: 10.1038/embor.2011.155.
The signaling tool box for tyrosine-based costimulation of lymphocytes. pdf
Engels N, Wienands J.
Curr Opin Immunol. 2011 Jun;23(3):324-9. doi: 10.1016/j.coi.2011.01.005.
Spatiotemporal resolution of Ca2+ signaling events by real time imaging of single B cells. pdf
Hanibal Bohnenberger, Thomas Oellerich, Michael Engelke, He-Hsuan Hsiao, Henning Urlaub, Jürgen Wienands
European journal of immunology, 25 May 2011; doi: 10.1002/eji.201041326
Prevention of cross-talk in conserved regulatory systems: identification of specificity determinants in RNA-binding anti-termination proteins of the BglG family. pdf
Hübner S, Declerck N, Diethmaier C, Le Coq D, Aymerich S, Stülke J.
Nucleic Acids Res, May 2011; 39(10):4360-72. doi: 10.1093/nar/gkr021